Annotated bladder scaffold for mouse available for registration of segmented neural anatomical-functional mapping of lower urinary tract (LUT) neural circuits.
Study Purpose: The goal of this work is to create an annotated generic mouse bladder scaffold for registration of segmented data obtained by experimental groups.
Data Collection: The generic scaffold is created based on the general description of mouse bladders from literature.
Primary Conclusion: None stated
Curator’s Notes:
Experimental Design: Not applicable.
Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.
Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic mouse bladder.
Primary vs derivative data: The primary folder contains the mapping tool provenance data file needed to produce the generic mouse bladder scaffold. The mapping tool will be accessible from the release download page on the SPARC Portal. The derivative folder contains json files which are used to generate a visualization of the scaffold on the web portal.
Code Availability: https://github.com/ABI-Software/scaffoldmaker (ABI-Software/scaffoldmaker Anatomical scaffold generator using OpenCMISS), https://models.physiomeproject.org/e/870 (scaffold source files).
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