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Generic mouse bladder scaffold

Keeran Balachandran
,
Zohreh Ekhlasi
,
Richard Christie, Ph.D.
,
Peter Hunter
,
Valerie Chopovda

Annotated bladder scaffold for mouse available for registration of segmented neural anatomical-functional mapping of lower urinary tract (LUT) neural circuits.

Updated on October 1, 2024 (Version 3)

Corresponding Contributor:

Valerie Chopovda
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Dataset Overview

Study Purpose: The goal of this work is to create an annotated generic mouse bladder scaffold for registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is created based on the general description of mouse bladders from literature.

Primary Conclusion: None stated


Curator’s Notes:

Experimental Design: Not applicable.

Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic mouse bladder.

Primary vs derivative data: The primary folder contains the mapping tool provenance data file describing the software environment in place when this dataset was created. The primary folder also contains the settings files which in conjunction with the software information in the provenance file, will reproduce the output files stored in the derivative folder. The derivative folder contains JSON files that are used to generate a webGL visualization of the scaffold on the SPARC portal, as well as the VTK and STL formats of the scaffold.

Code Availability: Scaffold Mapping Tools

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About this dataset

Publishing history

September 1, 2021
Originally Published
October 1, 2024 (Version 3)
Last Updated

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