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Test case for physiological data visualisation

Dataset to investigate annotations required for visualisation of physiological data on the portal
81 Files
48.78 MB
12 Records
CC-BY-4.0
Mabelle Lin updated on September 10, 2021
physiological data, time series, plot
Dataset Banner Image

Generic mouse brainstem scaffold

Annotated mouse brainstem scaffold available for registration of segmented neural anatomical-functional mapping of neural circuits.
25 Files
3.33 MB
No Records
CC-BY-4.0
Arti Sukasem updated on September 1, 2021
mouse, brainstem, scaffold + More
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Generic mouse heart scaffold

Annotated heart scaffold for mouse available for registration of segmented neural anatomical-functional mapping of cardiac neural circuits.
30 Files
4.76 MB
No Records
CC-BY-4.0
Richard Christie updated on September 1, 2021
mouse, coronary, heart + More
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Generic pig bladder scaffold

Annotated bladder scaffold for pig available for registration of segmented neural anatomical-functional mapping of lower urinary tract (LUT) neural circuit.
23 Files
2.85 MB
No Records
CC-BY-4.0
Keeran Balachandran updated on September 1, 2021
pig, urinary bladder, body of the bladder + More
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Jupyter Voila Interactive Data Analysis

Example use of voila - a JupyterLab extension that creates interactive web pages from an iPython Notebook. The example goes through data exploration and analysis of effects of stimulation on colon motility, based on a SPARC dataset.
6 Files
13.5 KB
No Records
MIT
Katie Zhuang updated on September 1, 2021
jupyter, colon, pig + More
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Generic mouse bladder scaffold

Annotated bladder scaffold for mouse available for registration of segmented neural anatomical-functional mapping of lower urinary tract (LUT) neural circuits.
23 Files
2.79 MB
No Records
CC-BY-4.0
Keeran Balachandran updated on September 1, 2021
mouse, urinary bladder, body of the bladder + More
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Effects of nodose ganglion blockade on gastric motility during cervical vagus nerve stimulation measured with magnetic resonance imaging in rats

This study aims to evaluate the effects of cervical VNS on gastric motility in rats. Gastric MRI was performed during cervical VNS with and without afferent blockade at the nodose ganglion.
93 Files
856.06 MB
1 Record
CC-BY-4.0
Zhongming Liu updated on August 26, 2021
vagus nerve stimulation, afferent blockade, gastric motility + More
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Monosynaptic circuit mapping of iBAT (interscapular brown adipose tissues) in mice

Molecular genetic techniques in the autonomic nervous system
68 Files
282.61 MB
25 Records
CC-BY-4.0
Heike Muenzberg updated on August 26, 2021
preganglionic neurons, iml, ibat + More
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Mouse whole-body with embedded organs

The generated body scaffold was fitted to data and the organ fiducial markers were embedded in the mouse whole-body. The landmarks were obtained from segmenting MRI data and also were defined in the body scaffold.
39 Files
22.53 MB
No Records
CC-BY-4.0
Elias Soltani updated on August 20, 2021
embed, mouse, bladder + More
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Generic mouse stomach scaffold

Annotated mouse stomach scaffold available for registration of segmented neural anatomical-functional mapping of enteric neural circuits.
39 Files
3.46 MB
5 Records
CC-BY-4.0
Mabelle Lin updated on August 20, 2021
stomach, mouse, myenteric plexus
Dataset Banner Image

Mapping of ICN Neurons in a 3D Reconstructed Rat Heart

Single intrinsic cardiac nervous system (ICN) neurons were marked in an image volume of heart sections that was anatomically delineated for the 3D reconstruction of the whole heart with mapped locations of individual ICN neurons.
23 Files
55.71 GB
18 Records
CC-BY-4.0

Sponsored by

NIH SPARC Program

Clara Leung updated on August 16, 2021
rat intrinsic cardiac neurons, knife edge scanning microscopy, rodent cardiac anatomy
Dataset Banner Image

Endorgan-specific Pseudorabies (PRV) infection in mouse kidney and liver

This dataset establishes dissection and clearing techniques for kidney- and liver-innervating ganglia
70 Files
864.73 GB
33 Records
CC-BY-4.0
Heike Muenzberg updated on August 12, 2021
kidney, prv, mesenteric ganglia + More
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Quantified Morphology of the Human Vagus Nerve with Anti-Claudin-1

Immunohistochemistry micrographs of human vagus nerves labeled with anti-claudin-1. Binary traces from segmentation to quantify effective nerve diameter, effective fascicle diameter, number of fascicles, and perineurium thickness.
264 Files
3.63 GB
48 Records
CC-BY-4.0

Sponsored by

NIH SPARC Program

Nicole Pelot updated on August 11, 2021
neural anatomy, autonomic nervous system, human + More
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Functional mapping with lumbosacral epidural stimulation for restoration of bladder function after spinal cord injury in rats (T13)

Animal study to determine the electrode configurations that promote functional gains in the storage and voiding phases of lower urinary tract function as a result of activation of spinal circuits with spinal cord epidural stimulation in injured spine.
55 Files
20.3 GB
66 Records
CC-BY-4.0
Fahmi Khalifa updated on August 11, 2021
urogenital, epidural stimulation, bladder + More
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Sources of off-target effects for vagus nerve stimulation using the LivaNova clinical lead in swine

Vagus Nerve Stimulation evoked vagus nerve compound action potential and neck muscle electromyography data
2,898 Files
68.06 GB
34 Records
CC-BY-4.0
Kip Ludwig updated on August 11, 2021
swine, peripheral, modeling + More
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Effects of subcutaneous nerve stimulation on nerve sprouting in ambulatory dogs

Growth-Associated Protein 43 (GAP43), tyrosine hydroxylase (TH) staining for LA, RA, LV, RV in dogs after 2 months of subcutaneous nerve stimulation (0, 0.25, 1.5, 2.5, and 3.5 mA)
2,310 Files
57.7 GB
120 Records
CC-BY-4.0
Peng-Sheng Chen updated on July 31, 2021
nerve sprouting, stellate ganglion, cardiac nerve sprouting
Dataset Banner Image

3D imaging of enteric neurons in a male mouse

Confocal image projection of enteric ganglia in a male mouse
197 Files
249.79 MB
11 Records
CC-BY-4.0
Marthe Howard updated on August 12, 2021
confocal, morphology, neural network + More
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Single cell RNA sequencing (scRNAseq) analysis identifies the cell populations in the muscularis externa of the pig colon

Single cell RNA sequencing of the pig colon
77 Files
43.41 GB
16 Records
CC-BY-4.0
Pu-Qing Yuan updated on July 16, 2021
transcriptomic analysis, pig colon, single cell rna sequencing + More
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Sympathetic and parasympathetic effects on subcellular cAMP responses in isolated ventricular myocytes

Measurement of compartmentalized cAMP responses to beta-adrenergic and muscarinic stimulation using FRET-based biosensors.
140 Files
11.9 GB
171 Records
CC-BY-4.0
Robert Harvey updated on July 16, 2021
lipid-rafts, camp, beta-adrenergic + More
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Antibodies tested in the colon – Mouse

List of antibodies that were tested in the mouse colon. Information on source, species, dilution, and whether the test was performed on whole colonic wall with CLARITY, or whole mount preparations of submucusal and myenteric plexus.
341 Files
22.43 GB
50 Records
CC-BY-4.0
Lixin Wang updated on July 16, 2021
antibody, colon
Dataset Banner Image

Jupyterlab Exploration of Computational Models of Unmyelinated Peripheral Axons

Example JupyterLab environment used to compile, run and display results of neural computational models, based on a SPARC dataset (https://doi.org/10.26275/iiwv-k07f)
6 Files
25.48 KB
No Records
MIT
Katie Zhuang updated on July 8, 2021
jupyterlab, neuron, computational model + More
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Fabbri-based composite SAN model

CellML version of the Fabbri et al. 2017 human sinoatrial node (SAN) cell model and an ODE-based version of the Gerstner & Kistler 2002 brain stem model combined to demonstrate the effect of brain stem activity on heart rate
6 Files
116.7 KB
No Records
CC-BY-4.0
Alan Garny updated on July 7, 2021
cardiac electrophysiology, cardiovascular models, human + More
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Human whole-body with embedded organs

The generated body scaffold was fitted to data and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold.
41 Files
52.26 MB
No Records
CC-BY-4.0
Elias Soltani updated on June 29, 2021
colon, heart, organ + More
Dataset Banner Image

Generic rat heart scaffold

Annotated heart scaffold for rat available for registration of segmented neural anatomical-functional mapping of cardiac neural circuits.
42 Files
4.94 MB
5 Records
CC-BY-4.0
Richard Christie updated on June 29, 2021
ventricles, coronary, rat + More
Dataset Banner Image

Generic rat brainstem scaffold

Annotated rat brainstem scaffold available for registration of segmented neural anatomical-functional mapping of neural circuits.
26 Files
3.36 MB
No Records
CC-BY-4.0
Arti Sukasem updated on June 29, 2021
brainstem, rat, scaffold
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