Generic rat heart scaffold

Study Purpose: The goal of this work is to create annotated generic rat heart scaffolds for registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is initially created based on the general description and average dimensions of rat hearts as measured by experimental groups. The scaffold was later calibrated and improved based on segmented image data from the experimental group who provided their data for the registration of neural data.

Primary Conclusion: None stated

Curator’s Notes

Experimental Design: Not applicable.

Completeness: The dataset is complete, but will be used to link to other datasets.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic rat heart.

Primary vs derivative data: The primary folder contains the mapping tool provenance data file describing the software environment in place when this dataset was created.  The primary folder also contains the settings files which in conjunction with the software information in the provenance file, will reproduce the output files stored in the derivative folder. The derivative folder contains JSON files that are used to generate a webGL visualization of the scaffold on the SPARC portal, as well as the VTK and STL formats of the scaffold.

Code Availability: Scaffold Mapping Tools