Annotated heart scaffold for rat available for registration of segmented neural anatomical-functional mapping of cardiac neural circuits.
Study Purpose: The goal of this work is to create annotated generic rat heart scaffolds for registration of segmented data obtained by experimental groups.
Data Collection: The generic scaffold is initially created based on the general description and average dimensions of rat hearts as measured by experimental groups. The scaffold was later calibrated and improved based on segmented image data from the experimental group who provided their data for the registration of neural data.
Primary Conclusion: None stated
Curator’s Notes
Experimental Design: Not applicable.
Completeness: The dataset is complete, but will be used to link to other datasets.
Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic rat heart.
Primary vs derivative data: The primary folder contains the mapping tool provenance data file needed to produce the generic rat heart scaffold. The mapping tool will be accessible from the release download page on the SPARC Portal. The derivative folder contains JSON files which are used to generate a visualization of the scaffold on the web portal.
Code Availability: https://github.com/ABI-Software/scaffoldmaker.
PMR Exposure link: https://models.physiomeproject.org/e/903
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