Generic pig colon scaffold

Study Purpose: The goal of this work is to create an annotated generic pig colon scaffold for the registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is created based on the general description and average dimensions of pig colons as measured by experimental groups who provide data to be registered on the scaffold.

Primary Conclusion: None stated

Curator’s Notes

Experimental Design: Not applicable.

Completeness: The dataset is the base that will be used to link to other datasets, therefore will not be "complete" in the same sense.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents an average colon of subjects used in other studies.

Primary vs derivative data: The primary folder contains the mapping tool provenance data file describing the software environment in place when this dataset was created.  The primary folder also contains the settings files which in conjunction with the software information in the provenance file, will reproduce the output files stored in the derivative folder. The derivative folder contains JSON files that are used to generate a webGL visualization of the scaffold on the SPARC portal, as well as the VTK and STL formats of the scaffold.

Code Availability: Scaffold Mapping Tools