Study Purpose: The goal of this work is to create an annotated generic pig colon scaffold for the registration of segmented data obtained by experimental groups.
Data Collection: The generic scaffold is created based on the general description and average dimensions of pig colons as measured by experimental groups who provide data to be registered on the scaffold.
Primary Conclusion: None stated
Experimental Design: Not applicable.
Completeness: The dataset is the base that will be used to link to other datasets, therefore will not be "complete" in the same sense.
Subjects & Samples: The generic scaffold is not subject/sample specific but represents an average colon of subjects used in other studies.
Primary vs derivative data: The primary folder contains the mapping tool provenance data file needed to produce the generic mouse colon scaffold. The mapping tool will be accessible from the release download page on the SPARC Portal. The derivative folder contains json files which are used to generate a visualization of the scaffold on the web portal.
Code Availability: https://github.com/ABI-Software/scaffoldmaker (ABI-Software/scaffoldmaker Anatomical scaffold generator using OpenCMISS), https://models.physiomeproject.org/e/859/ (scaffold source files)
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