Generic mouse colon scaffold

Mabelle Lin
,
Richard Christie, Ph.D.
,
Peter Hunter

Annotated mouse colon scaffold available for registration of segmented neural anatomical-functional mapping of enteric neural circuits.

Updated on October 1, 2024 (Version 9)

Corresponding Contributor:

Mabelle Lin
Dataset Banner Image
46 Files
341.22 MB
17 Records

Dataset Overview

Study Purpose: The goal of this work is to create annotated generic mouse scaffolds for registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is created based on the general description and average dimensions of mouse colons as measured by experimental groups who provide data to be registered on the scaffold.

Primary Conclusion: None stated


Curator’s Notes

Experimental Design: Not applicable.

Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents an average colon of subjects used in other studies.

Primary vs derivative data: The primary folder contains the mapping tool provenance data file describing the software environment in place when this dataset was created.  The primary folder also contains the settings files which in conjunction with the software information in the provenance file, will reproduce the output files stored in the derivative folder. The derivative folder contains JSON files that are used to generate a webGL visualization of the scaffold on the SPARC portal, as well as the VTK and STL formats of the scaffold.

Code Availability: Scaffold Mapping Tools

Files

Root Directory

0 - 0 of 0 files

No files found.

About this dataset

Publishing history

April 22, 2020
Originally Published
October 1, 2024 (Version 9)
Last Updated

Cite this dataset

Lin, M., Christie, R., & Hunter, P. (2024). Generic mouse colon scaffold (Version 9) [Dataset]. SPARC Portal. https://doi.org/10.26275/LLXF-EDEH

References

Is Supplemented by

Lin, M., & Sorby, H. (2024). Publishing Generic Organ Scaffold as a SPARC Dataset v2. https://doi.org/10.17504/protocols.io.6qpvr8q72lmk/v4