Generic mouse brainstem scaffold

Arti Sukasem
Shelley Fong
Richard Christie
Peter Hunter

Annotated mouse brainstem scaffold available for registration of segmented neural anatomical-functional mapping of neural circuits.

Updated on July 5, 2022 (Version 2, Revision 3)

Corresponding Contributor:

Arti Sukasem
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Dataset Overview

Study Purpose: The goal of this work is to create an annotated generic mouse brainstem scaffold for the registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is initially created based on the general description of mouse brainstem from magnetic resonance images (Mouse Imaging Centre in Toronto, Canada).

Primary Conclusion: None stated

Curator’s Notes:

Experimental Design: Not applicable.

Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic mouse brainstem.

Primary vs derivative data: The primary folder contains a provenance.json file containing all the software versions to generate this dataset. The derivative folder contains the JSON files used to generate a visualization of the scaffold on the web portal, and its annotations.

Code Availability:

PMR Exposure link:


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About this dataset

Publishing history

September 1, 2021
Originally Published
July 5, 2022 (Version 2)
Last Updated

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