Example use of voila - a JupyterLab extension that creates interactive web pages from an iPython Notebook. The example goes through data exploration and analysis of effects of stimulation on colon motility, based on a SPARC dataset.
The generated body scaffold was fitted to data and the organ fiducial markers were embedded in the mouse whole-body. The landmarks were obtained from segmenting MRI data and also were defined in the body scaffold.
Single intrinsic cardiac nervous system (ICN) neurons were marked in an image volume of heart sections that was anatomically delineated for the 3D reconstruction of the whole heart with mapped locations of individual ICN neurons.
Immunohistochemistry micrographs of human vagus nerves labeled with anti-claudin-1. Binary traces from segmentation to quantify effective nerve diameter, effective fascicle diameter, number of fascicles, and perineurium thickness.
NIH SPARC Program
updated on August 11, 2021
neural anatomy, autonomic nervous system, human
Animal study to determine the electrode configurations that promote functional gains in the storage and voiding phases of lower urinary tract function as a result of activation of spinal circuits with spinal cord epidural stimulation in injured spine.
List of antibodies that were tested in the mouse colon. Information on source, species, dilution, and whether the test was performed on whole colonic wall with CLARITY, or whole mount preparations of submucusal and myenteric plexus.
CellML version of the Fabbri et al. 2017 human sinoatrial node (SAN) cell model and an ODE-based version of the Gerstner & Kistler 2002 brain stem model combined to demonstrate the effect of brain stem activity on heart rate
updated on July 7, 2021
cardiac electrophysiology, cardiovascular models, human
The generated body scaffold was fitted to data and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold.