Scaffold map - Human vagus nerve
Segmented paths of human vagus nerve from skull to abdomen are mapped to a subject-specific vagus nerve scaffold for qualitative and quantitative visualization and analysis.
Dataset Overview
Study Purpose: The goal of this work is to map reconstructed human vagus nerve data from left and right nerve regions to multiple subject-specific vagus scaffold maps.
Data Collection: The data mapped in this dataset was derived from the original datasets (DOI 10.26275/k7hi-uttf, DOI 10.26275/rvfz-bdo3, DOI 10.26275/imas-52lf, DOI 10.26275/umlh-rede, DOI 10.26275/w5z5-fuk3, DOI 10.26275/ikc2-9rce, DOI 10.26275/uzk6-5ntj, DOI 10.26275/dp8r-bb7w, DOI 10.26275/gpmp-nogs, DOI 10.26275/un0a-zzdl, DOI 10.26275/ohiz-hpe2, DOI 10.26275/qcmb-kmbx, DOI 10.26275/rcyg-aggz, DOI 10.26275/p4nr-e670, DOI 10.26275/9o7h-matq, DOI 10.26275/t05q-dw4m, DOI 10.26275/a9ly-fpy6, DOI 10.26275/xulq-rf3s, DOI 10.26275/8ekx-tqxe, DOI 10.26275/jril-xkmc, DOI 10.26275/z4i9-zg3o). For each dataset, a subject-specific vagus scaffold (more about organ scaffolds) is created based on the annotated microCT segmentation data from the left and right nerve regions.
Primary Conclusion: None stated.
Curator's Notes
Experimental Design: This is a computational mapping dataset where segmented paths of human vagus nerve from skull to abdomen are mapped to subject-specific vagus nerve scaffolds for qualitative and quantitative visualization and analysis. Each scaffold represents a single subject with corresponding links to the source dataset, with most scaffolds including embedded fascicle data. The mapping process utilizes MAP-Client workflows and provenance data to generate scaffold visualizations from original microCT segmentation data.
Completeness: Not complete. Potentially will link to other datasets where the data is used for mapping onto the scaffold.
Subjects & Samples: The data mapped in this dataset were derived from data from one virtual human subject published in (DOI 10.26275/k7hi-uttf) and 20 late adult human published in (DOI 10.26275/rvfz-bdo3, DOI 10.26275/imas-52lf, DOI 10.26275/umlh-rede, DOI 10.26275/w5z5-fuk3, DOI 10.26275/ikc2-9rce, DOI 10.26275/uzk6-5ntj, DOI 10.26275/dp8r-bb7w, DOI 10.26275/gpmp-nogs, DOI 10.26275/un0a-zzdl, DOI 10.26275/ohiz-hpe2, DOI 10.26275/qcmb-kmbx, DOI 10.26275/rcyg-aggz, DOI 10.26275/p4nr-e670, DOI 10.26275/9o7h-matq, DOI 10.26275/t05q-dw4m, DOI 10.26275/a9ly-fpy6, DOI 10.26275/xulq-rf3s, DOI 10.26275/8ekx-tqxe, DOI 10.26275/jril-xkmc, DOI 10.26275/z4i9-zg3o).
Primary vs derivative data: The primary folder contains the mapping tool provenance data files needed to produce the scaffold map and MAP-Client workflows with settings files to reproduce the results. The derivative folder contains workflow files and JSON files used to generate visualization of the scaffold map on the web portal. Data is organized by left (L) and right (R) nerve regions with subfolders for data preparation, scaffold generation, flatmap creation, and visualization workflows.
Code Availability: Scaffold Mapping Tools
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Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Cang, J., Vardhan, A., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f022 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/Z4I9-ZG3O
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Tamas, I. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f020 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/JRIL-XKMC
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f019 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/8EKX-TQXE
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f018 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/XULQ-RF3S
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f017 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/A9LY-FPY6
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f015 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/T05Q-DW4M
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … McGonagle, E. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f014 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/9O7H-MATQ
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Tamas, I. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f013 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/P4NR-E670
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Nguyen, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f012 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/RCYG-AGGZ
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Tamas, I. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f011 [Dataset]. In SPARC REVA FEINSTEIN (Version 2). SPARC Portal. https://doi.org/10.26275/QCMB-KMBX
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f010 (Version 1) [Dataset]. SPARC Portal. https://doi.org/10.26275/OHIZ-HPE2
Zanos, S., Jayaprakash, N., Qanud, K., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … McGonagle, E. (2026). Human vagus nerve anatomical reconstruction using microCT immunohistochemistry and ultrasound - f009 [Dataset]. In SPARC REVA FEINSTEIN (Version 2). SPARC Portal. https://doi.org/10.26275/UN0A-ZZDL
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Tamas, I. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f008 [Dataset]. In SPARC REVA FEINSTEIN (Version 2). SPARC Portal. https://doi.org/10.26275/GPMP-NOGS
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Tamas, I. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f007 [Dataset]. In SPARC REVA FEINSTEIN (Version 1). SPARC Portal. https://doi.org/10.26275/DP8R-BB7W
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f005 [Dataset]. In SPARC REVA FEINSTEIN (Version 1). SPARC Portal. https://doi.org/10.26275/IKC2-9RCE
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., & Saleknezhad, P. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f004 [Dataset]. In SPARC REVA FEINSTEIN (Version 2). SPARC Portal. https://doi.org/10.26275/W5Z5-FUK3
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., & Saleknezhad, P. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f003 [Dataset]. In SPARC REVA FEINSTEIN (Version 1). SPARC Portal. https://doi.org/10.26275/UMLH-REDE
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Yari, T. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f002 [Dataset]. In SPARC REVA FEINSTEIN (Version 1). SPARC Portal. https://doi.org/10.26275/IMAS-52LF
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., & Saleknezhad, P. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f001 [Dataset]. In SPARC REVA FEINSTEIN (Version 1). SPARC Portal. https://doi.org/10.26275/RVFZ-BDO3
Zanos, S., Jayaprakash, N., Khaled, Q., Nassrallah, Z., Barbe, M., Chen, F. L., miller, larry, Zanos, T., Levy, T. J., Vardhan, A., Cang, J., Toth, V., Coppa, K., Ben-Shalom, N., Song, W., Carpentiere, N., Kanavos, T., Birbas, E., Bahadir, S., … Agoritsas, G. (2026). Human vagus nerve anatomical reconstruction using microCT and immunohistochemistry - f006 [Dataset]. In SPARC REVA FEINSTEIN (Version 2). SPARC Portal. https://doi.org/10.26275/UZK6-5NTJ
Christie, R., Chopovda, V., Lin, M., & Hunter, P. (2025). Human vagus nerve segmentation (Version 5) [Dataset]. SPARC Portal. https://doi.org/10.26275/K7HI-UTTF
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