SPARC Metadata Editor Tutorial – Creating new SDS Datasets

Savindi Wijenayaka
Elisabetta Iavarone

A tutorial showing how to expand the SPARC Dataset Structure on oSPARC

Updated on October 4, 2023 (Version 1)

Corresponding Contributor:

Elisabetta Iavarone
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Dataset Overview

Study Purpose: This tutorial shows how to expand the SPARC Dataset Structure (SDS) on oSPARC using a python module called SPARC Metadata Editor (sparc-me).

Data collection: Example datasets were imported from the SPARC Portal into oSPARC for further processing in a Jupyter notebook.

Primary conclusion: Thanks to sparc-me and to this tutorial researchers can easily expand the SDS on oSPARC and use it to create complex modeling/data analysis pipelines.

Curator's Notes

Experimental Design: This is the computational dataset.

Completeness: This dataset is complete.

Subjects & Samples: This is a computational dataset; thus no subjects are described.

Primary vs derivative data: Not applicable. This is a computational study. Only a configuration file to view and run the simulation on the oSPARC platform is provided.

Code availability: The source code for the Jupyter notebook is available here.


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About this dataset

Publishing history

October 4, 2023
Originally Published
October 4, 2023 (Version 1)
Last Updated

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