Annotated rat brainstem scaffold available for registration of segmented neural anatomical-functional mapping of neural circuits.
Study Purpose: The goal of this work is to create an annotated generic rat brainstem scaffold for the registration of segmented data obtained by experimental groups.
Data Collection: The generic scaffold is initially created based on the general description of rat brainstem from literature (DOI: 10.13099/VIP91106-04-0).
Primary Conclusion: None stated
Curator’s Notes:
Experimental Design: Not applicable.
Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.
Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic rat brainstem.
Primary vs derivative data: The primary folder contains a provenance.json file containing all the software versions to generate this dataset. The derivative folder contains the JSON files used to generate a visualization of the scaffold on the web portal, and its annotations.
Code Availability: https://github.com/ABI-Software/scaffoldmaker.
PMR Exposure link: https://models.physiomeproject.org/e/8fc
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