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Generic human brainstem scaffold

Arti Sukasem
,
Richard Christie
,
Peter Hunter

Annotated human brainstem scaffold available for registration of segmented neural anatomical-functional mapping of neural circuits.

Updated on June 23, 2022 (Version 2, Revision 1)

Corresponding Contributor:

Arti Sukasem
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Dataset Overview

Study Purpose: The goal of this work is to create an annotated generic human brainstem scaffold for the registration of segmented data obtained by experimental groups.

Data Collection: The generic scaffold is initially created based on the general description of the human brainstem from literature (BodyParts3D V4.3i; DOI: 10.1093/nar/gkn613).

Primary Conclusion: None stated


Curator’s Notes:

Experimental Design: Not applicable.

Completeness: The study is ongoing and potentially will link to other datasets where the data is used for mapping onto the scaffold.

Subjects & Samples: The generic scaffold is not subject/sample specific but represents a generic human brainstem.

Primary vs derivative data: The primary folder contains a provenance.json file containing all the software versions to generate this dataset. The derivative folder contains the JSON files used to generate a visualization of the scaffold on the web portal, and its annotations.

PMR Exposure link: https://models.physiomeproject.org/e/863/

Code Availability: https://github.com/ABI-Software/scaffoldmaker.

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About this dataset

Publishing history

June 29, 2021
Originally Published
June 23, 2022 (Version 2)
Last Updated

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