Jupyterlab Exploration of Computational Models of Unmyelinated Peripheral Axons

Katie Zhuang
,
Nicole A Pelot, Ph.D.

Example JupyterLab environment used to compile, run and display results of neural computational models, based on a SPARC dataset (https://doi.org/10.26275/iiwv-k07f)

Updated on April 9, 2021 (Version 1)

Corresponding Contributor:

Katie Zhuang
Dataset Banner Image
12 Files
27.14 MB
No Records

Dataset Overview

Study purpose: # SPARC Sample Report Study. This is an example study that contains a single JupyterLab instance with neuron-modeling components preinstalled. Code and models from a SPARC dataset (see Notes) are already copied in the service in the Pelot_code directory. Each subdirectory also contains a README.md explaining the contents of the subdirectory and how to run the code inside (if applicable). An example report generated from the outcomes of the models are located in the "Report_example" directory.

Data collection: Example Data Exploration of a SPARC Dataset using JupyterLab on o²S²PARC This dataset uses the code submitted by Pelot et al. in https://doi.org/10.26275/iiwv-k07f The study consists of a JupyterLab instance in which users may compile NEURON mechanism files, run Python and M-file simulations, and shows an example of a report that can be generated from the simulation results.

Primary conclusion:


Curator's Notes

Experimental Design: This is a computational study.

Completeness: Complete.

Subjects & Samples: Not applicable. This is a computational study.

Primary vs derivative data: Not applicable. This is a computational study, no primary data was collected.

Code Availability: The code included in this example are derived from three sources:

  1. Excitation properties of computational models of unmyelinated peripheral axons Nicole A. Pelot, David C. Catherall, Brandon J. Thio, Nathan D. Titus, Edward D. Liang, Craig S. Henriquez, and Warren M. Grill https://journals.physiology.org/doi/abs/10.1152/jn.00315.2020 Journal of Neurophysiology 2021 125:1, 86-104*
  2. The data contained in the paper cited above is on Blackfynn: https://doi.org/10.26275/iiwv-k07f
  3. Primary code release is on ModelDB: https://senselab.med.yale.edu/ModelDB/showmodel.cshtml?model=266498#tabs-1

Last modified by Katie Zhuang 03.03.2021

Primary code release is on ModelDB: https://senselab.med.yale.edu/ModelDB/showmodel.cshtml?model=266498#tabs-1

Important notes: The data contained in the paper is available on the SPARC Portal: https://sparc.science/datasets/86?type=dataset

Files

Root Directory

0 - 0 of 0 files

No files found.

About this dataset

Publishing history

April 9, 2021
Originally Published
April 9, 2021 (Version 1)
Last Updated

Cite this dataset

References

Derived from